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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SingleR
_pkgver=2.6.0
pkgname=r-${_pkgname,,}
pkgver=2.6.0
pkgrel=1
pkgdesc='Reference-Based Single-Cell RNA-Seq Annotation'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-beachmat
r-biocneighbors
r-biocparallel
r-biocsingular
r-delayedarray
r-delayedmatrixstats
r-rcpp
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-biocgenerics
r-biocstyle
r-celldex
r-ggplot2
r-grdevices
r-gridextra
r-knitr
r-pheatmap
r-rmarkdown
r-scater
r-scran
r-scrnaseq
r-scuttle
r-singlecellexperiment
r-testthat
r-viridis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('26605843ba9e6d5c916008349e99c6a0437813827047fa217147ba1fa25e6350')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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