blob: ab832fcb84a14007488997cbaff2ea716816fdf2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SparseSignatures
_pkgver=2.16.0
pkgname=r-${_pkgname,,}
pkgver=2.16.0
pkgrel=1
pkgdesc='SparseSignatures'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r-biostrings
r-bsgenome
r-data.table
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gridextra
r-iranges
r-nmf
r-nnlasso
r-nnls
r-reshape2
r-rhpcblasctl
)
optdepends=(
r-biocgenerics
r-biocstyle
r-bsgenome.hsapiens.1000genomes.hs37d5
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a37afacea1fcd9972cc9d669ca6af225c396f281fe0db0f2c971403a37b2d6be')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|