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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SPONGE
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Sparse Partial Correlations On Gene Expression"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-biobase
r-biomart
r-caret
r-complexheatmap
r-cvms
r-data.table
r-dorng
r-dplyr
r-expm
r-foreach
r-ggplot2
r-ggpubr
r-ggridges
r-glmnet
r-grbase
r-igraph
r-iterators
r-logging
r-metbrewer
r-ppcor
r-randomforest
r-rlang
r-stringr
r-tidyr
r-tidyverse
r-tnet
)
optdepends=(
r-bigmemory
r-digest
r-doparallel
r-ggrepel
r-gridextra
r-gsva
r-knitr
r-rmarkdown
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2133e52cd4046b2fa7e40988ac2cdc0c')
b2sums=('f3b93ade9302650f54b642829c4f3e2be5092c8510b00befa8f493fa9a659979efdc4e527f08ab8a426c433a0eb4dee63f0be8bba0528b62c10f937e47321f6f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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