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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=StructuralVariantAnnotation
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Variant annotations for structural variants"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-biocgenerics
r-biostrings
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-pwalign
r-rlang
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biovizbase
r-bsgenome.hsapiens.ucsc.hg19
r-devtools
r-ggbio
r-ggplot2
r-knitr
r-rmarkdown
r-roxygen2
r-testthat
r-tidyverse
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9072d77c242f802f7440da1838bf4a03')
b2sums=('01dd031b9c63fc0296a4acf122f938d94a6f3ee50d3655c8f6900224597b2b94facc7466829637627c1824be50d17630595005a244f39b4f08726ce0d8fe19f9')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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