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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=tadar
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcriptome Analysis of Differential Allelic Representation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-matrixgenerics
r-rlang
r-rsamtools
r-s4vectors
r-variantannotation
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-limma
r-rmarkdown
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2befd08cefb1a79c02ba456de5d8ef2a')
b2sums=('a9e3202f943c683df1e51d30c4646f502cd324a71782f1e85c5037e972c6047c55737c9efd12651c3700d5cfce55fa05f70dbaa28eee74d41340ee7104c20341')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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