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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TOP
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="TOP Constructs Transferable Model Across Gene Expression Platforms"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-caret
r-classifyr
r-directpa
r-doparallel
r-dplyr
r-ggnewscale
r-ggplot2
r-ggraph
r-ggrepel
r-ggthemes
r-glmnet
r-hmisc
r-igraph
r-latex2exp
r-limma
r-magrittr
r-plotly
r-proc
r-purrr
r-reshape2
r-statmod
r-stringr
r-tibble
r-tidygraph
r-tidyr
)
optdepends=(
r-biobase
r-biocstyle
r-curatedovariandata
r-ggbeeswarm
r-ggsci
r-knitr
r-rmarkdown
r-survminer
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e7eea3f74f27ddabef17781a4ec84721')
b2sums=('c3394df4ade2123e68b8e0eed8157d3fae3a26fc1494c3d87c96ec8d1008fbe203a36bd146868332057562c827dc744ef1b8566a3e56c69e0cf0fb9b3ded47b4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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