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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=tximeta
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Transcript Quantification Import with Automatic Metadata"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-annotationdbi
r-annotationhub
r-biocfilecache
r-biostrings
r-ensembldb
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-jsonlite
r-s4vectors
r-summarizedexperiment
r-tibble
r-txdbmaker
r-tximport
)
optdepends=(
r-deseq2
r-devtools
r-edger
r-fishpond
r-knitr
r-limma
r-org.dm.eg.db
r-rmarkdown
r-testthat
r-tximportdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bd4f17024e7ddfe3c007e5726deef378')
b2sums=('ba0a1bfa3de5e92aa21a6588446fd2d896f8f1c1451ba025aff02b375a72ecaeaa25cb80b1d2281c09e5d66db391927a54a375f7aed9ce24cb608b6a474fbaa6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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