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# Contributor: Stunts <f.pinamartins@gmail.com>
pkgname=raxml-standard-git
pkgver=20180529
pkgrel=1
pkgdesc="Randomized Axelerated Maximum Likelihood - standard version from git"
arch=(i686 x86_64)
url="https://github.com/stamatak/standard-RAxML"
license=('GPL3')
depends=()
optdepends=('openmpi: for buildin MPI capable binary')
makedepends=('git' 'make')
conflicts=('raxml' 'raxml-mpi')
source=('git+https://github.com/stamatak/standard-RAxML.git')
md5sums=('SKIP')
pkgver() {
cd ${srcdir}/standard-RAxML
git log -1 --format='%cd' --date=short | tr -d -- '-'
}
prepare() {
#Check whether the CPU supports SSE3 instruction set:
if $(grep -q pni /proc/cpuinfo)
then
makefile=Makefile.SSE3
extension=-SSE3
msg "Using SSE3 instruction set since your CPU seems to support it."
else
makefile=Makefile
extension=''
msg "Not using SSE3 instructions set since your CPU does not seem to support it."
fi
}
build() {
cd ${srcdir}/standard-RAxML
#Build single thread binary
msg "Building single thread binary..."
make -f ${makefile}.gcc
rm *.o
#Build MPI binary (if OpenMPI is available)
msg "Looking for mpicc..."
if $(which mpicc |grep -q "/")
then
msg "Found a suitable mpicc, building MPI binary..."
make -f ${makefile}.MPI.gcc
rm *.o
mpi=1
else
msg "No suitable mpicc found, skipping MPI binary build."
mpi=0
fi
#Build Pthreads binary
msg "Building PTHREADS binary..."
make -f ${makefile}.PTHREADS.gcc
rm *.o
}
package() {
if $(grep -q pni /proc/cpuinfo)
then
extension=-SSE3
else
extension=''
fi
install -d ${pkgdir}/usr/bin
cp ${srcdir}/standard-RAxML/raxmlHPC${extension} ${pkgdir}/usr/bin/
cp ${srcdir}/standard-RAxML/raxmlHPC-PTHREADS${extension} ${pkgdir}/usr/bin/
if [ $mpi ]
then
cp ${srcdir}/standard-RAxML/raxmlHPC-MPI${extension} ${pkgdir}/usr/bin/
fi
}
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