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# Maintainer: Bipin Kumar <kbipinkumar@pm.me>
pkgname=rnalysis
_name=RNAlysis
pkgver=4.1.0
pkgrel=1
pkgdesc='Python-based software for analyzing RNA sequencing data. https://doi.org/10.1101/2022.11.25.517851'
_pkgdesc='Python-based GUI tool for analyzing RNA sequencing data'
arch=(any)
url=https://github.com/GuyTeichman/RNAlysis
license=(MIT)
depends=(
'python'
'cython'
'python-numpy'
'python-pandas'
'python-scipy'
'python-matplotlib'
'python-requests'
'python-scikit-learn'
'python-seaborn'
'python-statsmodels'
'python-joblib'
'python-tqdm'
'python-appdirs'
'python-yaml'
'python-pyqt5'
'python-qdarkstyle'
'qt5-imageformats'
'python-aiodns'
'python-defusedxml'
'python-aiohttp'
'python-brotli'
'python-networkx'
'python-typing_extensions'
'graphviz'
'python-graphviz'
'r'
'cutadapt'
'python-numba'
'python-hdbscan'
'python-matplotlib-venn'
'kallisto'
'python-scikit-learn-extra'
'python-grid-strategy'
'python-upsetplot'
'python-xlmhglite'
'python-plotly'
'python-pairwisedist'
'python-aiolimiter'
'python-pyvis'
'python-nest-asyncio'
)
makedepends=(
'python-pip'
'git'
'gendesk'
'twine'
'python-setuptools'
'python-setuptools-scm'
'python-sphinx'
'python-wheel'
'python-installer'
'python-build'
'python-sphinx_rtd_theme'
'python-pytest-runner'
'python-pytest'
'python-anyio'
'python-pytest-xvfb'
'python-pytest-qt'
'python-coverage'
)
#source=(${_name}-${pkgver}.tar.gz::https://github.com/GuyTeichman/RNAlysis/archive/refs/tags/V"${pkgver}".tar.gz
# )
source=("git+https://github.com/GuyTeichman/RNAlysis.git#tag=V$pkgver"
)
#sha256sums=('03eb4e19a306e746e6f7d42bb2f77b72ec07b2cafbf54a941ff0038f72b57b16')
sha256sums=('c4d9353100c45473af731479001f9d4b91a2ced250328fccf12854d85b98257d')
prepare() {
#cd "$_name-$pkgver"
cd "$_name"
gendesk --exec='/usr/bin/rnalysis-gui' --pkgname "$_name" --pkgdesc "$_pkgdesc" -n --icon=RNAlysis --categories=Science
}
build() {
#cd "$_name-$pkgver"
cd "$_name"
python -m build --wheel --no-isolation
}
check(){
export QT_DEBUG_PLUGINS=1
#cd "$_name-$pkgver"
cd "$_name"
python setup.py pytest | tee check.log
}
package() {
#cd "$_name-$pkgver"
cd "$_name"
python -m installer --destdir="$pkgdir" dist/*.whl
install -Dm644 LICENSE -t "$pkgdir/usr/share/licenses/$pkgname"
install -Dm644 RNAlysis.desktop -t "$pkgdir"/usr/share/applications/
install -Dm644 docs/source/RNAlysis.svg -t "$pkgdir"/usr/share/pixmaps/
}
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