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#!/bin/sh
# General environment for beast2, sourced by other beast2 excutables
export JAVA_HOME=${JAVA_HOME:-/usr/lib/jvm/default}
export BEAST=/usr/share/beast2
export DEFAULT_CP="/usr/share/beast2/lib/beagle.jar"
export BEAST_LIB="$BEAST/lib"
export JAVA="$JAVA_HOME"/bin/java
JFX="$JAVA_HOME/lib"
export CLASS_PATH="/usr/share/beast2/lib:${JFX}"
jfx_modules=(
controls
fxml
graphics
base
web
media
swing
)
for mod in ${jfx_modules[@]}
do
JFX_LIBS="$JFX_LIBS:$JFX/javafx.${mod}.jar"
done
loaded_jfx_modules=(
controls
fxml
)
JFX_MODULES=$(printf "javafx.%s," "${loaded_jfx_modules[@]}" |sed 's/,*$//g')
export JFX_LIBS
export JFX_MODULES
# use BEAGLE_LIB if the BEAGLE library is not in a standard location
export BEAST_EXTRA_LIBS="$BEAST_EXTRA_LIBS:$BEAGLE_LIB"
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