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diff --git a/clang-tools-extra/clangd/ClangdLSPServer.cpp b/clang-tools-extra/clangd/ClangdLSPServer.cpp
index 05dd313d0a0d..24bf2b503de3 100644
--- a/clang-tools-extra/clangd/ClangdLSPServer.cpp
+++ b/clang-tools-extra/clangd/ClangdLSPServer.cpp
@@ -1424,7 +1424,10 @@ void ClangdLSPServer::applyConfiguration(
tooling::CompileCommand(std::move(Command.workingDirectory), File,
std::move(Command.compilationCommand),
/*Output=*/"");
- if (CDB->setCompileCommand(File, std::move(Cmd))) {
+ if (Cmd.CommandLine.empty() && Cmd.Directory.empty()) {
+ if (CDB->setCompileCommand(File, std::nullopt))
+ ModifiedFiles.insert(File);
+ } else if (CDB->setCompileCommand(File, std::move(Cmd))) {
ModifiedFiles.insert(File);
}
}
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