Strange issue: when the `afl` package is installed, ATLAS tries to use `afl-gcc` instead of `gcc`.
I skimmed the configure script and the Makefile, and there doesn't seem to be anywhere it's searching for an alternative gcc executable. Passing congfigure the `--cc=gcc` option, or setting the CC environment variable to `CC=gcc` both have no effect.
The simplest solution is to remove the `afl` package when you're building ATLAS. Does anyone have a better solution?
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Package Details: atlas-lapack 1:3.10.3-9
Package Actions
Git Clone URL: | https://aur.archlinux.org/atlas-lapack.git (read-only, click to copy) |
---|---|
Package Base: | atlas-lapack |
Description: | Automatically Tuned Linear Algebra Software |
Upstream URL: | http://math-atlas.sourceforge.net |
Licenses: | BSD, custom:lapack |
Provides: | atlas-lapack-base, blas, cblas, lapack |
Submitter: | ilpianista |
Maintainer: | henkm |
Last Packager: | henkm |
Votes: | 93 |
Popularity: | 0.000005 |
First Submitted: | 2008-04-24 01:36 (UTC) |
Last Updated: | 2024-02-01 12:28 (UTC) |
Dependencies (2)
- gcc-libs (gcc-libs-gitAUR, gccrs-libs-gitAUR, gcc11-libsAUR, gcc-libs-snapshotAUR)
- gcc-fortran (gcc-fortran-gitAUR, gcc11-fortranAUR, gcc-fortran-snapshotAUR) (make)
Required by (548)
- abinit (requires blas)
- abinit (requires lapack)
- algodoo (requires lapack)
- ambertools (requires blas)
- ambertools (requires lapack)
- amino-git (requires cblas)
- amino-git (requires lapack)
- apbs (requires blas)
- apbs (requires lapack)
- armadillo (requires blas)
- armadillo (requires lapack)
- arpack-git (requires lapack)
- arrayfire-git (requires cblas)
- atompaw (requires lapack)
- atomsk-git (requires blas)
- atomsk-git (requires lapack)
- avs-device-sdk (requires cblas)
- basix (requires lapack)
- basix-git (requires blas)
- basix-git (requires lapack)
- Show 528 more...
Sources (4)
Latest Comments
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epitron commented on 2015-09-10 03:15 (UTC)
Chais commented on 2015-05-04 18:23 (UTC)
This seems to be missing most of the headers. All the libs are there, but only cblas.h and clapack.h are in /usr/include.
giniu commented on 2015-04-29 12:58 (UTC)
Then maybe you have small amount of /tmp size on tmpfs? Most AUR helpers build in /tmp, so sometimes they get stuck when you run out of /tmp space.
mutor commented on 2015-04-29 12:54 (UTC)
Hey giniu,
this week I tried to install it using simple pkgbuild method, it has worked. earlier I was using AURA, that had failed couple of times.
giniu commented on 2015-04-24 09:14 (UTC)
it takes well too long. Can you somehow pass me the file that is mentioned in this log? I.e. error_<ARCH>.tgz - there are all informations about how configure went and what decisions were taken during build, so it would help a lot.
mutor commented on 2015-04-24 08:55 (UTC)
Build is failing for gcc 4.9.2, and is it supposed to take 7 hours? my CPU is AMD 8350 8-core. Log is following:
gcc version 4.9.2 20150304 (prerelease) (GCC)
/usr/bin/x86_64-unknown-linux-gnu-gcc-4.9.2 -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
x86_64-unknown-linux-gnu-gcc-4.9.2: error: unrecognized command line option ‘-V’
x86_64-unknown-linux-gnu-gcc-4.9.2: fatal error: no input files
compilation terminated.
Make.top:4: recipe for target 'error_report' failed
make[4]: [error_report] Error 1 (ignored)
/usr/bin/x86_64-unknown-linux-gnu-gcc-4.9.2 --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
tar cf error_AMDDRIVER64AVXMAC.tar Make.inc bin/INSTALL_LOG/*
bzip2 error_AMDDRIVER64AVXMAC.tar
make[4]: Leaving directory '/var/cache/pacman/pkg/atlas-lapack2194/atlas-lapack/src/ATLAS/build'
make[3]: Leaving directory '/var/cache/pacman/pkg/atlas-lapack2194/atlas-lapack/src/ATLAS/build'
make[2]: Leaving directory '/var/cache/pacman/pkg/atlas-lapack2194/atlas-lapack/src/ATLAS/build/bin'
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory. Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory
Make.top:15: recipe for target 'build' failed
make[1]: *** [build] Error 255
make[1]: Leaving directory '/var/cache/pacman/pkg/atlas-lapack2194/atlas-lapack/src/ATLAS/build'
Makefile:488: recipe for target 'build' failed
make: *** [build] Error 2
arojas commented on 2013-11-11 07:57 (UTC)
The build failure should be fixed with glibc 2.18-10
kyak commented on 2013-10-04 20:18 (UTC)
@Marbur thanks, adding "-D c -DWALL" only in PKGBUILD made it work for me!
MarBur commented on 2013-10-04 19:57 (UTC)
On further checking downgrading gcc isn't necessary.
Try first with only -D c -DWALL without pstate change or anything it might work.
I used pstate because I needed atlas badly and didn't have time to figure out all combinations of working and non-working.
And changing kernel cmdline is 2 minute work and one restart.
Maybe if you can turn off power sawing this isn't necessary but my frequency kept changing no matter what I did.
Pinned Comments
phcerdan commented on 2017-06-08 06:48 (UTC) (edited on 2017-06-08 06:49 (UTC) by phcerdan)