Package Details: fsl 6.0.7.16-1

Git Clone URL: https://aur.archlinux.org/fsl.git (read-only, click to copy)
Package Base: fsl
Description: A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
Upstream URL: http://www.fmrib.ox.ac.uk/fsl/
Licenses: custom
Submitter: fishburn
Maintainer: tobac
Last Packager: tobac
Votes: 12
Popularity: 0.000000
First Submitted: 2012-07-02 23:36 (UTC)
Last Updated: 2024-12-22 17:38 (UTC)

Dependencies (1)

Required by (4)

Sources (1)

Latest Comments

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javierbg commented on 2022-03-10 12:30 (UTC)

The newmat package is broken, the source link is down (503 error). This library seems to be really abandoned, is there any way to remove this dependency?

I commented on the newmat package page a place where you can download the original source to recreate the newmat package manually if anyone needs it.

tobac commented on 2022-02-20 17:26 (UTC) (edited on 2022-02-20 17:27 (UTC) by tobac)

6.0.5.1-6 includes a fix by liamtimms, which might just be the solution to that build problem a lot of users are experiencing. The suspected culprit is implicit parallel compiling (which is now explicitly disabled by supplying "-j 1"). I hope this solves it for good.

liamtimms commented on 2022-02-04 15:14 (UTC) (edited on 2022-02-04 15:14 (UTC) by liamtimms)

out of curiosity, has anyone been able to get this build to complete at all recently? my last successful build was in October

tobac commented on 2021-11-29 17:41 (UTC)

You certainly can, but it's probably the same error that's been popping up and we don't have solution for.

liamtimms commented on 2021-11-29 13:26 (UTC)

getting a failed build in fslsurface, do you want me to email log file?

tobac commented on 2021-10-07 23:33 (UTC)

It should and will be.

liamtimms commented on 2021-10-07 21:45 (UTC)

@tobac thanks, maybe it should be a make dependency? (if it is not needed after building+checking)

tobac commented on 2021-10-07 16:33 (UTC)

@liamtimms: "inetutils" has to be installed, I might add this to the dependencies.

liamtimms commented on 2021-10-07 16:32 (UTC)

hitting an error in the check function: 


Build completed successfully.
==> Starting check()...
couldn't execute "hostname": no such file or directory
    while executing
"exec hostname "
    (file "/home/ripley/.cache/paru/clone/fsl/src/fsl/tcl/fslstart.tcl" line 10)
    invoked from within
"source ${FSLDIR}/tcl/fslstart.tcl"
    (file "./RUN" line 179)
==> ERROR: A failure occurred in check().
    Aborting...

javierbg commented on 2021-09-12 19:11 (UTC) (edited on 2021-09-12 19:12 (UTC) by javierbg)

I really don't think this is a CPU issue, this has to be a linker configuration error, albeit a weird one.

I have let makepkg prepare the sources and canceled right before building and tried from scratch. It built successfully.

I have investigated the specific link errors given on the log (fslsurface_name::getFSLtoNIFTIxfm, fslsurface_name::meshRegLeastSq, fslsurface_name::vertexMVglm, fslsurface_name::FtoP, fslsurface_name::reconAllSurfacesAndSave, and fslsurface_name::reconSurface_from_bvars) and they are all defined in the same header, fslsurface/fslsurface_first.h, which is both in src and include, although my knowledge of how the linker works is too limited to know if that means anything.

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