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Package Details: fsl 6.0.7.16-1
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Git Clone URL: | https://aur.archlinux.org/fsl.git (read-only, click to copy) |
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Package Base: | fsl |
Description: | A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data |
Upstream URL: | http://www.fmrib.ox.ac.uk/fsl/ |
Licenses: | custom |
Submitter: | fishburn |
Maintainer: | tobac |
Last Packager: | tobac |
Votes: | 12 |
Popularity: | 0.000000 |
First Submitted: | 2012-07-02 23:36 (UTC) |
Last Updated: | 2024-12-22 17:38 (UTC) |
Required by (4)
- fsl-palm (optional)
- fsleyes (optional)
- python-nipype (optional)
- python-pyfab
Latest Comments
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javierbg commented on 2021-01-21 09:57 (UTC)
@quoctri Thanks, the workaround helped.
Has the new FSL version introduced the CUDA dependency as mandatory or optional? If optional, I think it should be disabled for this package, as it is 2GB (and I don't even have a CUDA capable device).
Also, the necessity of
MAKEFLAGS="-j1"
sounds like an error in the project build configuration by the developers.liamtimms commented on 2020-12-03 19:04 (UTC)
@quoctri thanks for investigating this, installing CUDA did the trick. Unfortunate to pull such a large dependency but it does work.
keiichiiownsu12 commented on 2020-11-21 02:05 (UTC)
@tobac would it help if some of us sent you information about the build environment we are using?
quoctri commented on 2020-11-20 14:07 (UTC) (edited on 2020-11-20 19:20 (UTC) by quoctri)
Getting the same error as @liamtimms. Inspecting the builld logs for projects fdt and ptx2 while searching for
make:.*Error
yields the following linesfdt:
ptx2:
@tobac I'll send you the complete build.log file by email. I'll try to investigate further as well.
EDIT: I'm not there yet, but I feel like I'm getting somewhere. I'm logging my process here hoping it will be useful to someone.
The previous errors were mitigated by installing cuda
pacman -S cuda
Then I got an error in the check() of the PKGBUILD:
So the build completes succesfully, but something was wrong with the imcp. I manually ran
${FSLDIR}/bin/imcp
which gave:So fslpy wasn't found. I checked this by running
pip list
, which indeed did not containfslpy
. So I manually ran the dependencyyay -S fslpy
. Fired up the python console and ran:Now manually ran the dependency
yay -S python-dataclasses
and ran the above again.Voila! I reran the package build and it built correctly!
ASIDE: Whenever I assigned multiple cores to makepkg in order to speed up the build I received:
Building with 1 core eliminated this. I changed this using the
MAKEFLAGS="-j1"
flag in/etc/makepkg.conf
, but a different more package specific option would probably be better:keiichiiownsu12 commented on 2020-09-14 22:34 (UTC)
@liamtimms you should email either @tobac or @adkipnis for a binary package, if you need to update.
liamtimms commented on 2020-08-28 15:35 (UTC)
Getting this:
in the build log on the new update. Haven't had time to investigate further.
tobac commented on 2020-08-26 10:01 (UTC)
FSL 6.0.4. Good luck.
tobac commented on 2020-07-26 20:45 (UTC)
@adkipnis Sent you an email.
adkipnis commented on 2020-07-26 12:01 (UTC)
@tobac I'd like to compare the two binaries in practice. How may I access your version? :)
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