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Package Details: python-biopython 1.85-1
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Git Clone URL: | https://aur.archlinux.org/python-biopython.git (read-only, click to copy) |
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Package Base: | python-biopython |
Description: | Freely available Python tools for computational molecular biology |
Upstream URL: | http://www.biopython.org |
Licenses: | LicenseRef-Biopython License |
Submitter: | jelly |
Maintainer: | kbipinkumar (BioArchLinuxBot) |
Last Packager: | BioArchLinuxBot |
Votes: | 0 |
Popularity: | 0.000000 |
First Submitted: | 2024-10-06 11:39 (UTC) |
Last Updated: | 2025-01-16 12:04 (UTC) |
Dependencies (19)
- glibc (glibc-gitAUR, glibc-linux4AUR, glibc-eacAUR, glibc-eac-binAUR)
- python (python37AUR, python311AUR, python310AUR)
- python-numpy (python-numpy-gitAUR, python-numpy1AUR, python-numpy-mkl-binAUR, python-numpy-mkl-tbbAUR, python-numpy-mklAUR)
- python-pillow
- python-scipy (python-scipy-gitAUR, python-scipy-mkl-binAUR, python-scipy-mkl-tbbAUR, python-scipy-mklAUR)
- python-setuptools (make)
- python-coverage (check)
- python-igraph (check)
- python-matplotlib (python-matplotlib-gitAUR) (check)
- python-mmtfAUR (check)
- python-networkx (python-networkx-gitAUR) (check)
- python-rdflib (check)
- python-reportlab (check)
- python-scipy (python-scipy-gitAUR, python-scipy-mkl-binAUR, python-scipy-mkl-tbbAUR, python-scipy-mklAUR) (check)
- python-matplotlib (python-matplotlib-gitAUR) (optional) – to plot phylogenetic trees.
- python-mysql-connector (optional) – for BioSQL module
- python-networkx (python-networkx-gitAUR) (optional) – for certain niche functions in Bio.Phylo module
- python-rdflib (optional) – CDAO parser under Bio.Phylo module
- python-reportlab (optional) – for graph generation
Required by (16)
- hybpiper
- mitos
- nanoget
- nanoqc
- python-bcbio-gff
- python-cclib (optional)
- python-cclib-git (check)
- python-cclib-git (optional)
- python-codon-adaptation-index
- python-gffutils (optional)
- python-mdanalysis
- python-prody
- python-pydna
- python-rgt
- snakemake (optional)
- snakemake7 (optional)
Latest Comments
micwoj92 commented on 2024-12-16 23:03 (UTC)
Please add optdeps on
python-scipy
,python-pillow
,python-networkx
,python-reportlab
,python-msgpack
,python-igraph
,python-rdflib
,python-mmtf
,python-matplotlib
.