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Package Details: r-genomeinfodb 1.38.8-1
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| Git Clone URL: | https://aur.archlinux.org/r-genomeinfodb.git (read-only, click to copy) |
|---|---|
| Package Base: | r-genomeinfodb |
| Description: | Utilities for manipulating chromosome names, including modifying them to follow a particular naming style |
| Upstream URL: | https://bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html |
| Licenses: | Artistic-2.0 |
| Submitter: | greyltc |
| Maintainer: | greyltc (peippo) |
| Last Packager: | peippo |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2019-02-09 14:14 (UTC) |
| Last Updated: | 2024-04-08 14:55 (UTC) |
Dependencies (20)
- r (r352AUR, r-mklAUR)
- r-biocgenericsAUR
- r-genomeinfodbdataAUR
- r-irangesAUR
- r-rcurlAUR
- r-s4vectorsAUR
- r-biocstyleAUR (optional)
- r-bsgenomeAUR (optional)
- r-bsgenome.celegans.ucsc.ce2AUR (optional)
- r-bsgenome.hsapiens.ncbi.grch38AUR (optional)
- r-bsgenome.scerevisiae.ucsc.saccer2AUR (optional)
- r-data.tableAUR (optional)
- r-genomicalignmentsAUR (optional)
- r-genomicfeaturesAUR (optional)
- r-genomicrangesAUR (optional)
- r-knitrAUR (optional)
- r-r.utilsAUR (optional)
- r-rsamtoolsAUR (optional)
- r-runitAUR (optional)
- r-txdb.dmelanogaster.ucsc.dm3.ensgeneAUR (optional)
Required by (355)
- r-alabaster.ranges
- r-allelicimbalance
- r-alpine
- r-amplican
- r-aneufinder
- r-annotationforge (optional)
- r-annotationhub (optional)
- r-annotationhubdata
- r-annotatr
- r-atacseqqc
- r-atacseqtfea
- r-atena
- r-baalchip
- r-ballgown
- r-bambu
- r-basicstarrseq
- r-bindingsitefinder
- r-bioconcotk (optional)
- r-bioplex
- r-biostrings
- r-biovizbase
- r-biscuiteer
- r-biseq
- r-bnbc
- r-branchpointer
- r-breakpointr
- r-brgenomics
- r-bsgenome
- r-bsgenome.hsapiens.ucsc.hg38
- r-bsgenomeforge
- r-bsseq
- r-bumphunter
- r-busparse
- r-cagefightr
- r-cageminer
- r-cager
- r-cardelino
- r-casper
- r-cbioportaldata
- r-cexor
- r-cfdnakit
- r-cfdnapro
- r-chimeraviz
- r-chipanalyser
- r-chipcomp
- r-chipenrich
- r-chipenrich.data
- r-chipexoqual
- r-chippeakanno
- r-chipseeker
- r-chromstar
- r-chromswitch (optional)
- r-chromvar
- r-cindex
- r-circrnaprofiler
- r-cleanupdtseq
- r-cn.mops
- r-cner
- r-cnvfilter
- r-cnvpanelizer
- r-cnvranger
- r-codex
- r-cogito
- r-comapr
- r-compepitools
- r-consensusseeker
- r-conumee
- r-copynumberplots
- r-crisprseek
- r-crisprvariants
- r-csar
- r-csaw
- r-customprodb
- r-damefinder
- r-dasper
- r-decomptumor2sig
- r-deconstructsigs
- r-deepbluer
- r-demuxsnp
- r-derfinder
- r-derfinderplot
- r-descan2
- r-dewseq
- r-diffbind (optional)
- r-diffhic
- r-diffloop
- r-diffutr
- r-dmrcate
- r-dmrscan
- r-dmrseq
- r-dominoeffect
- r-easylift
- r-easyrnaseq
- r-elmer
- r-encodexplorer
- r-enhancerhomologsearch
- r-enrichtf
- r-ensembldb
- r-ensemblvep
- r-epialleler
- r-epigenomix
- r-epigrahmm
- r-epimix
- r-epimutacions
- r-epitxdb
- r-epivizr
- r-epivizrdata
- r-epivizrstandalone
- r-erma
- r-esatac
- r-eventpointer
- r-exomecopy
- r-exomepeak2
- r-experimenthubdata (optional)
- r-extrachips
- r-factr
- r-findit2
- r-fishpond (optional)
- r-flames
- r-fraser
- r-funchip
- r-funtoonorm
- r-ga4ghclient
- r-ga4ghshiny
- r-gcapc
- r-gdnax
- r-genbankr
- r-geneattribution
- r-genogam
- r-genomation
- r-genomautomorphism
- r-genomeintervals
- r-genomicalignments
- r-genomicdistributions
- r-genomicfeatures
- r-genomicfiles
- r-genomicinteractionnodes
- r-genomicinteractions
- r-genomicozone
- r-genomicplot
- r-genomicranges
- r-genomicscores
- r-genomicstate
- r-genomictuples
- r-genvisr
- r-ggbio
- r-gmapr
- r-gmoviz
- r-gothic
- r-granie
- r-greylistchip
- r-grohmm
- r-guideseq
- r-gviz
- r-gwascat
- r-h5vc
- r-heatmaps
- r-helloranges
- r-hicbricks
- r-hicdcplus
- r-hicdoc
- r-hicexperiment
- r-hicontacts
- r-hicvenndiagram
- r-hitc
- r-htseqgenie
- r-ideoviz
- r-idr2d
- r-imas
- r-inpas
- r-inspect
- r-interactionset
- r-isoformswitchanalyzer
- r-ivas
- r-karyoploter
- r-katdetectr
- r-ldblock (optional)
- r-macpet
- r-madseq
- r-mafdb.1kgenomes.phase3.hs37d5
- r-mafdb.exac.r1.0.hs37d5
- r-mafdb.exac.r1.0.nontcga.hs37d5
- r-mafdb.gnomadex.r2.1.hs37d5
- r-mariner
- r-maser
- r-megadepth (optional)
- r-metagene
- r-metagene2
- r-metaseqr2
- r-methcp
- r-methimpute
- r-methinheritsim
- r-methrix (optional)
- r-methylkit
- r-methylpipe
- r-methylsig
- r-methylumi
- r-minfi
- r-minimumdistance
- r-mmappr2
- r-monalisa
- r-mosaics
- r-motif2site
- r-motifbreakr
- r-motifmatchr
- r-mousefm
- r-msgbsr
- r-multicrispr
- r-multihiccompare
- r-mungesumstats
- r-musicatk
- r-mutationalpatterns
- r-myvariant
- r-nadfinder
- r-nearbynding
- r-netdx
- r-norce
- r-normr
- r-nucler
- r-nullranges
- r-nxtirfcore
- r-oder
- r-ogre
- r-omicspca
- r-orfik
- r-organism.dplyr
- r-outrider (optional)
- r-panelcn.mops
- r-parglms (optional)
- r-periodicdna
- r-phastcons100way.ucsc.hg19
- r-phastcons100way.ucsc.hg38
- r-pi
- r-pipeframe
- r-plotgardener
- r-plotgardener (optional)
- r-plyinteractions
- r-plyranges
- r-podkat
- r-pram
- r-prebs
- r-proactiv
- r-profileplyr
- r-proteodisco
- r-proteomicsannotationhubdata
- r-purecn
- r-qdnaseq (optional)
- r-qpgraph
- r-qsea
- r-quasr
- r-r3cpet
- r-r3cseq
- r-raer
- r-raggedexperiment
- r-raids (optional)
- r-rarevariantvis
- r-rcade
- r-rcas
- r-rcgh
- r-rcistarget
- r-recount
- r-recoup
- r-regioner
- r-regionereloaded (optional)
- r-regionreport
- r-remp
- r-repitools
- r-resolve
- r-rfpred
- r-rgntx
- r-rgreat
- r-ribocrypt
- r-riboprofiling
- r-riboseqr
- r-ribosomeprofilingqc
- r-rjmcmcnucleosomes
- r-rlseq
- r-rnaeditr
- r-rnamodr
- r-roar
- r-rsamtools
- r-rtcgatoolbox
- r-rtracklayer
- r-scanmir
- r-scanmirapp
- r-scdblfinder
- r-scmeth
- r-scope
- r-scrnaseqapp
- r-scruff
- r-sctreeviz (optional)
- r-segmentseq
- r-seqarchrplus
- r-seqarray
- r-seqcat
- r-seqsetvis
- r-sesame
- r-sesamedata
- r-seurat (optional)
- r-sevenc
- r-sgseq
- r-shortread
- r-signac
- r-signer
- r-sigspack
- r-singlemoleculefootprinting
- r-sitadela
- r-snphood
- r-snplocs.hsapiens.dbsnp144.grch37
- r-snplocs.hsapiens.dbsnp150.grch38
- r-soggi
- r-somaticsignatures
- r-somnibus
- r-sparsesignatures
- r-spatzie
- r-spiky
- r-splatter (optional)
- r-splicewiz
- r-splicinggraphs
- r-splinter
- r-srnadiff
- r-strandcheckr
- r-structuralvariantannotation
- r-summarizedexperiment
- r-svanumt
- r-svaretro
- r-systempiper (optional)
- r-tadar
- r-tapseq
- r-tcgautils
- r-tekrabber
- r-tenxio
- r-tfbstools
- r-tfutils (optional)
- r-titancna
- r-tnt
- r-trackviewer
- r-transcriptr
- r-trnascanimport
- r-tsrchitect
- r-tvtb
- r-txdbmaker
- r-tximeta
- r-ucsc.utils (optional)
- r-ularcirc
- r-umi4cats
- r-vanillaice
- r-variantannotation
- r-variantfiltering
- r-varianttools
- r-vasp
- r-vplotr
- r-wiggleplotr
- r-xtrasnplocs.hsapiens.dbsnp144.grch37
- r-yapsa
Latest Comments
pekkarr commented on 2023-06-17 13:30 (UTC)
This package has a semi-cyclical dependency:
r-genomeinfodbcheckdepends onr-genomicranges, which depends onr-genomeinfodb.dviktor commented on 2022-01-17 20:14 (UTC)
I'm leaving maintenance and support for this package in favor of new repository. You can install pre-built packages from my repo