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Package Details: r-rtracklayer 1.66.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-rtracklayer.git (read-only, click to copy) |
|---|---|
| Package Base: | r-rtracklayer |
| Description: | R interface to genome annotation files and the UCSC genome browser |
| Upstream URL: | https://bioconductor.org/packages/rtracklayer |
| Licenses: | Artistic-2.0 AND LicenseRef-rtracklayer |
| Submitter: | BioArchLinuxBot |
| Maintainer: | BioArchLinuxBot |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2022-06-06 13:45 (UTC) |
| Last Updated: | 2024-11-09 20:25 (UTC) |
Dependencies (29)
- curl (curl-http3-ngtcp2AUR, curl-gitAUR, curl-c-aresAUR)
- openssl (openssl-gitAUR, openssl-staticAUR)
- r-biocgenericsAUR
- r-biocioAUR
- r-biostringsAUR
- r-curlAUR
- r-genomeinfodbAUR
- r-genomicalignmentsAUR
- r-genomicrangesAUR
- r-httrAUR
- r-irangesAUR
- r-restfulrAUR
- r-rsamtoolsAUR
- r-s4vectorsAUR
- r-xmlAUR
- r-xvectorAUR
- r-zlibbiocAUR
- zlib (zlib-ng-compat-gitAUR, zlib-gitAUR, zlib-ng-compat)
- r-bsgenomeAUR (optional)
- r-bsgenome.hsapiens.ucsc.hg19AUR (optional)
- r-genefilterAUR (optional)
- r-genomicfeaturesAUR (optional)
- r-hgu133plus2.dbAUR (optional)
- r-humanstemcell (optional)
- r-limmaAUR (optional)
- r-micrornaAUR (optional)
- r-org.hs.eg.dbAUR (optional)
- r-runitAUR (optional)
- r-txdb.hsapiens.ucsc.hg19.knowngeneAUR (optional)
Required by (256)
- r-alabaster.files (optional)
- r-alpine (optional)
- r-alps
- r-annotationhub (optional)
- r-annotationhubdata
- r-annotatr
- r-apalyzer
- r-atacseqqc
- r-atacseqtfea
- r-autonomics (optional)
- r-ballgown
- r-bgeecall
- r-bindingsitefinder
- r-biocfilecache (optional)
- r-biovizbase (optional)
- r-biscuiteer
- r-biseq
- r-branchpointer
- r-brgenomics
- r-bsgenome
- r-bsgenomeforge
- r-bsseq (optional)
- r-cagefightr
- r-cager
- r-casper
- r-cexor
- r-chipanalyser
- r-chipcomp
- r-chipenrich
- r-chipenrich.data
- r-chippeakanno
- r-chipseeker
- r-chromheatmap
- r-chromscape
- r-chromswitch
- r-cicero (optional)
- r-cindex (optional)
- r-circrnaprofiler
- r-cliprofiler
- r-cner
- r-comet
- r-compartmap
- r-compepitools (optional)
- r-consensusseeker
- r-contibait
- r-conumee
- r-coverageview
- r-crisprvariants (optional)
- r-cssq
- r-cummerbund
- r-customprodb
- r-damefinder (optional)
- r-dasper
- r-deepbluer
- r-derfinder
- r-descan2
- r-diffbind (optional)
- r-diffhic
- r-diffloop
- r-diffutr
- r-dmcfb
- r-dmchmm
- r-dmrseq
- r-easylift
- r-eisar (optional)
- r-elmer
- r-encodexplorer
- r-enhancerhomologsearch
- r-enrichtf
- r-ensembldb
- r-epidecoder
- r-epigrahmm
- r-epimutacions
- r-epistack (optional)
- r-epivizrchart (optional)
- r-epivizrdata (optional)
- r-erma
- r-esatac
- r-excluster
- r-exomepeak2
- r-extrachips
- r-factr
- r-fcscan
- r-findit2
- r-flames
- r-genbankr
- r-geneattribution
- r-genelendatabase
- r-genestructuretools
- r-genextender
- r-genextender (optional)
- r-genomation
- r-genomicalignments (optional)
- r-genomicdistributions (optional)
- r-genomicfeatures
- r-genomicfiles
- r-genomicinteractionnodes (optional)
- r-genomicinteractions
- r-genomicplot
- r-genomicranges (optional)
- r-genomicstate
- r-ggbio
- r-gmapr
- r-gmoviz
- r-goseq (optional)
- r-gothic
- r-greylistchip
- r-grohmm
- r-guitar
- r-gviz
- r-gwascat (optional)
- r-helloranges
- r-hiannotator
- r-hicdcplus
- r-hicexperiment (optional)
- r-hicontacts (optional)
- r-hicvenndiagram
- r-hitc
- r-htseqgenie
- r-icetea
- r-ideoviz
- r-igvr
- r-inpas (optional)
- r-inspect
- r-intad
- r-interactivedisplay (optional)
- r-isoformswitchanalyzer
- r-karyoploter
- r-m6aboost
- r-macpet
- r-madseq
- r-magpie
- r-maser
- r-medips
- r-megadepth (optional)
- r-metagene
- r-metagene2
- r-metaseqr2
- r-methrix
- r-methylkit
- r-methylseekr
- r-methylumi (optional)
- r-mirbaseconverter (optional)
- r-moonlight2r
- r-motifbreakr
- r-motifdb
- r-multicrispr
- r-mungesumstats
- r-mutationalpatterns (optional)
- r-nadfinder
- r-nanomethviz (optional)
- r-nearbynding
- r-norce
- r-normr
- r-nxtirfcore
- r-nxtirfdata
- r-oder
- r-ogre
- r-omicspca
- r-orfhunter
- r-orfik
- r-organismdbi (optional)
- r-past
- r-periodicdna
- r-pi (optional)
- r-pics (optional)
- r-ping (optional)
- r-pipeframe (optional)
- r-plotgardener (optional)
- r-plyinteractions (optional)
- r-plyranges
- r-pqsfinder (optional)
- r-pram
- r-primirtss
- r-probamr
- r-profileplyr
- r-proteodisco (optional)
- r-purecn
- r-qsea
- r-quasr
- r-r3cseq
- r-r453plus1toolbox (optional)
- r-raer
- r-rcas
- r-rcistarget (optional)
- r-recount
- r-recount3
- r-recoup
- r-regioner
- r-remp
- r-repitools
- r-rgadem (optional)
- r-rgmql
- r-riboprofiling
- r-ribosomeprofilingqc
- r-rifi
- r-rificomparative
- r-ringo (optional)
- r-ripat
- r-rlseq
- r-rmspc
- r-rnamodr
- r-rnamodr.alkanilineseq (optional)
- r-rnamodr.ml (optional)
- r-rnamodr.ribomethseq (optional)
- r-rnbeads (optional)
- r-roar
- r-rsvsim (optional)
- r-scanmirapp
- r-scanvis
- r-scdblfinder
- r-scpipe
- r-scrnaseqapp
- r-scruff
- r-seqcat
- r-seqsetvis
- r-seurat (optional)
- r-sevenc
- r-sgseq
- r-shinyepico
- r-signac (optional)
- r-signer
- r-sigspack
- r-similarpeak (optional)
- r-sitadela
- r-soggi
- r-somnibus
- r-spatiallibd
- r-splicewiz
- r-srnadiff
- r-structuralvariantannotation
- r-svanumt
- r-svaretro
- r-syntenet
- r-systempiper (optional)
- r-systempiperdata (optional)
- r-tapseq (optional)
- r-tcgautils (optional)
- r-tekrabber
- r-tfbstools
- r-trackviewer
- r-transcriptr
- r-tress
- r-triplex (optional)
- r-trnadbimport (optional)
- r-trnascanimport
- r-tsrchitect
- r-tvtb (optional)
- r-txcutr
- r-txdbmaker
- r-valr
- r-variantannotation
- r-varianttools
- r-wavcluster
- r-wiggleplotr
- r-xcore (optional)