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Package Details: r-variantannotation 1.52.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-variantannotation.git (read-only, click to copy) |
|---|---|
| Package Base: | r-variantannotation |
| Description: | Annotation of Genetic Variants |
| Upstream URL: | https://bioconductor.org/packages/VariantAnnotation |
| Licenses: | Artistic-2.0 |
| Submitter: | BioArchLinuxBot |
| Maintainer: | BioArchLinuxBot |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2022-06-06 18:31 (UTC) |
| Last Updated: | 2024-12-18 14:01 (UTC) |
Dependencies (38)
- bzip2 (bzip2-gitAUR)
- curl (curl-quiche-gitAUR, curl-http3-ngtcp2AUR, curl-gitAUR, curl-c-aresAUR)
- r-annotationdbiAUR
- r-biobaseAUR
- r-biocgenericsAUR
- r-biostringsAUR
- r-bsgenomeAUR
- r-dbiAUR
- r-genomeinfodbAUR
- r-genomicfeaturesAUR
- r-genomicrangesAUR
- r-irangesAUR
- r-matrixgenericsAUR
- r-rsamtoolsAUR
- r-rtracklayerAUR
- r-s4vectorsAUR
- r-summarizedexperimentAUR
- r-xvectorAUR
- r-zlibbiocAUR
- xz (xz-gitAUR)
- zlib (zlib-ng-compat-gitAUR, zlib-gitAUR, zlib-ng-compat)
- r-rhtslibAUR (make)
- r-annotationhubAUR (optional)
- r-biocstyleAUR (optional)
- r-bsgenome.hsapiens.ucsc.hg19AUR (optional)
- r-ggplot2AUR (optional)
- r-httrAUR (optional)
- r-jsonliteAUR (optional)
- r-knitrAUR (optional)
- r-magickAUR (optional)
- r-polyphen.hsapiens.dbsnp131AUR (optional)
- r-rjsonconsAUR (optional)
- r-runitAUR (optional)
- r-sift.hsapiens.dbsnp132 (optional)
- r-sift.hsapiens.dbsnp137AUR (optional)
- r-snplocs.hsapiens.dbsnp144.grch37AUR (optional)
- r-snpstatsAUR (optional)
- r-txdb.hsapiens.ucsc.hg19.knowngeneAUR (optional)
Required by (94)
- r-alabaster.files (check)
- r-alabaster.files (optional)
- r-alabaster.vcf
- r-allelicimbalance
- r-annotationhub (optional)
- r-apalyzer
- r-appreci8r
- r-badregionfinder
- r-bbcanalyzer
- r-biocparallel (optional)
- r-biovizbase
- r-biscuiteer
- r-cardelino
- r-cellbaser (optional)
- r-cnvfilter
- r-cnvgears (optional)
- r-cnvrd2
- r-copynumberplots
- r-cosmic.67
- r-crisprvariants (optional)
- r-customprodb
- r-damefinder
- r-decomptumor2sig
- r-deconstructsigs (optional)
- r-deepsnv
- r-demuxsnp
- r-dominoeffect
- r-ensemblvep
- r-epialleler
- r-fcscan
- r-ga4ghclient
- r-genbankr
- r-genomicdatacommons (optional)
- r-genomicfiles
- r-genomicranges (optional)
- r-genomicscores (optional)
- r-genvisr
- r-ggbio
- r-gmapr
- r-gwascat
- r-gwastools (optional)
- r-gwasurvivr
- r-helloranges
- r-htseqgenie
- r-icetea
- r-igvr
- r-karyoploter
- r-katdetectr
- r-ldblock (optional)
- r-lineagespot
- r-madseq
- r-mmappr2
- r-motifbreakr
- r-mungesumstats
- r-musicatk
- r-mutationalpatterns
- r-myvariant
- r-omicsprint (optional)
- r-podkat (optional)
- r-polyphen.hsapiens.dbsnp131
- r-proteodisco
- r-purecn
- r-r453plus1toolbox
- r-raids
- r-rarevariantvis
- r-rvs (optional)
- r-scoreinvhap
- r-seqarray (optional)
- r-seqcat
- r-sift.hsapiens.dbsnp137
- r-signer
- r-sigspack
- r-snphood
- r-somaticsignatures
- r-splatter (optional)
- r-structuralvariantannotation
- r-supersigs (optional)
- r-svanumt
- r-svaretro
- r-systempiper (optional)
- r-tadar
- r-titancna
- r-tloh
- r-trackviewer (optional)
- r-trio (optional)
- r-tvtb
- r-uniquorn
- r-variantfiltering
- r-varianttools
- r-vcfarray
- r-vtpnet (optional)
- r-xcir
- r-yapsa
- r-zygositypredictor