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@martin3141 I'm having the same error with check() that you reported. It is the exact same output. I tried your solution of reinstalling the python-deprecation package, but the failure keeps occurring. How did you realize which package was missing from your system?

I'm glad it's working for you now. Thanks for mentioning the fslpy dependencies issue, I sadly failed to notice AKSoo's comment.

v6.0.1 is working for me now - thanks :)

My original problem with the check failure was also an issue with v6.0.1. Turned out the cause was that the python-deprecation package was missing from my system, maybe this should be added to the makedepends for fsl, or perhaps it should be a dependency (rather than a makedepends) for fslpy (there is a comment suggesting this from AKSoo).

Well, it's even simpler and somewhat embarrassing. I forgot to copy the adapted 001-use_distribution_environment.patch from my test environment to my "release environment". That's why it worked for me and didn't for you. You shouldn't do things in a hurry. Fixed.

Thanks for updating! I think you forgot to update a checksum : "001-use_distribution_environment.patch ... FAILED"

Skipping the check with --skipinteg reveals a further issue: " patching file fsl/etc/fslconf/fsl.sh patching file fsl/etc/fslconf/fsl.csh patching file fsl/etc/fslconf/fsl-devel.sh patching file fsl/extras/build patching file fsl/src/mist-clean/Makefile can't find file to patch at input line 110 Perhaps you used the wrong -p or --strip option? "

Updated to FSL version 6.0.1. I also decided to reduce the clunkiness of 001-use_distribution_environment.patch and ship {externallibs,systemvars}.mk as separate files. Seems less ugly this way.

Hi, this is for 6.0.0, but if you're working on 6.0.1 then no need to update as I don't mind waiting for the next version. Thanks for the effort!

Hi Martin, I'm in the process of packaging 6.0.1. Is this the 6.0.0 you're trying to build or did you modify the PKGBUILD etc. yourself for 6.0.1?

I'm getting the following error in check():

Starting SIENAX (including testing BET and FLIRT and FAST) at Fri 22 Mar 13:05:59 GMT 2019
child process exited abnormally
while executing
"fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/data/structural $FEEDSDIR/results/structural"" invoked from within
"if { $feeds(sienax) } {

puts "\nStarting SIENAX (including testing BET and FLIRT and FAST) at [ exec date ]"

fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/..."
(file "./RUN" line 233)
==> ERROR: A failure occurred in check().
Aborting...

@tobac Great job with the package! Definitely much cleaner now. I just always hate trying to figure out what changed when the patch no longer applies after a version change (though still better than sed silently failing). Also curious to see if the phenomenon persists where a working package just changes hashes or stops building without any version change.