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Package Details: r-mkl 4.4.2-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/r-mkl.git (read-only, click to copy)
Package Base:	r-mkl
Description:	Language and environment for statistical computing and graphics, linked to the Intel(R) MKL.
Upstream URL:	http://www.r-project.org/
Keywords:	hpc mathematics modelling r statistics
Licenses:	GPL
Conflicts:	microsoft-r-open, r
Provides:	r
Submitter:	giniu
Maintainer:	alexanderp
Last Packager:	alexanderp
Votes:	25
Popularity:	0.000082
First Submitted:	2010-05-06 00:10 (UTC)
Last Updated:	2024-11-12 19:56 (UTC)

Dependencies (28)

bzip2 (bzip2-git^AUR)
curl (curl-quiche-git^AUR, curl-http3-ngtcp2^AUR, curl-git^AUR, curl-c-ares^AUR)
icu (icu-git^AUR)
intel-oneapi-mkl (intel-oneapi-hpckit^AUR, intel-oneapi-basekit)
libjpeg (mozjpeg-git^AUR, libjpeg-turbo-git^AUR, mozjpeg^AUR, libjpeg-turbo)
libpng (libpng-git^AUR, libpng-apng^AUR)
libtiff (libtiff-git^AUR, libtiff-lerc^AUR)
libxmu
libxt
ncurses (ncurses-git^AUR)
openmp
pango (pango-git^AUR)
pcre2 (pcre2-git^AUR)
perl (perl-git^AUR)
readline (readline-git^AUR)
unzip (unzip-natspec^AUR, unzip-zstd^AUR)
which (busybox-coreutils^AUR)
xz (xz-git^AUR)
zip (zip-natspec^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat)
Show 8 more dependencies...

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r-illuminahumanmethylation450kanno.ilmn12.hg19 (requires r)
r-illuminahumanmethylation450kmanifest (requires r)
r-illuminahumanmethylationepicanno.ilm10b2.hg19 (requires r)
r-illuminahumanmethylationepicanno.ilm10b4.hg19 (requires r)
r-illuminahumanmethylationepicmanifest (requires r)
r-illuminaio (requires r)
r-imager (requires r)
r-imas (requires r)
r-imcrtools (requires r)
r-immunespacer (requires r)
r-immunoclust (requires r)
r-immunotation (requires r)
r-imp4p (requires r)
r-import (requires r)
r-impute (requires r)
r-imputelcmd (requires r)
r-inaparc (requires r)
r-indeed (requires r)
r-ineq (requires r)
r-infercnv (requires r)
r-infinityflow (requires r)
r-influencer (requires r)
r-infotheo (requires r)
r-ini (requires r)
r-inline (requires r)
r-inpas (requires r)
r-insight (requires r)
r-intad (requires r)
r-intansv (requires r)
r-interaccircos (requires r)
r-interactionset (requires r)
r-interactivecomplexheatmap (requires r)
r-interactivedisplaybase (requires r)
r-intercellar (requires r)
r-intergraph (requires r)
r-interminer (requires r)
r-interp (requires r)
r-intervals (requires r)
r-intramirexplorer (requires r)
r-inum (requires r)
r-invariantcausalprediction (requires r)
r-inversion (requires r)
r-investr (requires r)
r-invgamma (requires r)
r-ioniser (requires r)
r-ipath (requires r)
r-ipddb (requires r)
r-ipo (requires r)
r-ipred (requires r)
r-iranges (requires r)
r-irdisplay (requires r)
r-irkernel (requires r)
r-irlba (requires r)
r-isa2 (requires r)
r-isanalytics (requires r)
r-iseehex (requires r)
r-iseeu (requires r)
r-iseq (requires r)
r-isingfit (requires r)
r-isingsampler (requires r)
r-islr (requires r)
r-ismev (requires r)
r-iso (requires r)
r-isoband (requires r)
r-isobar (requires r)
r-isocodes (requires r)
r-isocorrector (requires r)
r-isocorrectorgui (requires r)
r-isolde (requires r)
r-isoweek (requires r)
r-isva (requires r)
r-italics (requires r)
r-italicsdata (requires r)
r-iterativebma (requires r)
r-iterativebmasurv (requires r)
r-iterators (requires r)
r-iteremoval (requires r)
r-itertools (requires r)
r-ivas (requires r)
r-ivygapse (requires r)
r-iwtomics (requires r)
r-janeaustenr (requires r)
r-janitor (requires r)
r-jaspacceptancesampling (requires r)
r-jaspanova (requires r)
r-jaspar2016 (requires r)
r-jaspar2018 (requires r)
r-jaspaudit (requires r)
r-jaspbain (requires r)
r-jaspbase (requires r)
r-jaspbsts (requires r)
r-jaspcircular (requires r)
r-jaspcochrane (requires r)
r-jaspdescriptives (requires r)
r-jaspdistributions (requires r)
r-jaspequivalencettests (requires r)
r-jaspfactor (requires r)
r-jaspfrequencies (requires r)
r-jaspgraphs (requires r)
r-jaspjags (requires r)
r-jasplearnbayes (requires r)
r-jasplearnstats (requires r)
r-jaspmachinelearning (requires r)
r-jaspmetaanalysis (requires r)
r-jaspmixedmodels (requires r)
r-jaspnetwork (requires r)
r-jasppower (requires r)
r-jasppredictiveanalytics (requires r)
r-jaspprocess (requires r)
r-jaspprocesscontrol (requires r)
r-jaspprophet (requires r)
r-jaspqualitycontrol (requires r)
r-jaspregression (requires r)
r-jaspreliability (requires r)
r-jaspresults (requires r)
r-jasprobustttests (requires r)
r-jaspsem (requires r)
r-jaspsummarystatistics (requires r)
r-jaspsurvival (requires r)
r-jasptimeseries (requires r)
r-jasptools (requires r)
r-jaspttests (requires r)
r-jaspvisualmodeling (requires r)
r-jdx (requires r)
r-jose (requires r)
r-jpeg (requires r)
r-jqr (requires r)
r-jsonify (requires r)
r-jsonlite (requires r)
r-kableextra (requires r)
r-karyoploter (requires r)
r-kboost (requires r)
r-kcsmart (requires r)
r-kegg.db (requires r)
r-kegggraph (requires r)
r-kegglincs (requires r)
r-keggorthology (requires r)
r-keggprofile (requires r)
r-keggrest (requires r)
r-kendall (requires r)
r-keras (requires r)
r-kernlab (requires r)
r-kinship2 (requires r)
r-kinswingr (requires r)
r-kissde (requires r)
r-kit (requires r)
r-kknn (requires r)
r-klar (requires r)
r-km.ci (requires r)
r-kmer (requires r)
r-kml (requires r)
r-kmlshape (requires r)
r-kmsurv (requires r)
r-knitrbootstrap (requires r)
r-knn.covertree (requires r)
r-knowseq (requires r)
r-kodata (requires r)
r-kohonen (requires r)
r-korpus.lang.en (requires r)
r-kpeaks (requires r)
r-kriging (requires r)
r-ks (requires r)
r-kutils (requires r)
r-labeling (requires r)
r-labelled (requires r)
r-lace (requires r)
r-laeken (requires r)
r-lahman (requires r)
r-lambda.r (requires r)
r-lambertw (requires r)
r-languageserver (requires r)
r-laplacesdemon (requires r)
r-lars (requires r)
r-lasso2 (requires r)
r-latex2exp (requires r)
r-latticeextra (requires r)
r-lavaan (requires r)
r-lazyeval (requires r)
r-lbe (requires r)
r-lda (requires r)
r-ldblock (requires r)
r-lea (requires r)
r-leaflet (requires r)
r-leaflet.providers (requires r)
r-leaps (requires r)
r-learnr (requires r)
r-ledpred (requires r)
r-leiden (requires r)
r-leidenbase (requires r)
r-les (requires r)
r-levi (requires r)
r-lexicon (requires r)
r-lfda (requires r)
r-liblinear (requires r)
r-lim (requires r)
r-limer-git (requires r)
r-limmagui (requires r)
r-lineagepulse (requires r)
r-linkcomm (requires r)
r-linkhd (requires r)
r-linnorm (requires r)
r-lintr (requires r)
r-lionessr (requires r)
r-lipidr (requires r)
r-liquidassociation (requires r)
r-lisaclust (requires r)
r-lisreltor (requires r)
r-listenv (requires r)
r-lmdme (requires r)
r-lmertest (requires r)
r-lmodel2 (requires r)
r-lmom (requires r)
r-lmoments (requires r)
r-lobstahs (requires r)
r-locfdr (requires r)
r-locfit (requires r)
r-loci2path (requires r)
r-loder (requires r)
r-log4r (requires r)
r-logger (requires r)
r-logging (requires r)
r-logicreg (requires r)
r-logistf (requires r)
r-logitnorm (requires r)
r-lognormreg (requires r)
r-logspline (requires r)
r-lola (requires r)
r-longitudinaldata (requires r)
r-loomexperiment (requires r)
r-loose.rock (requires r)
r-lowmacaannotation (requires r)
r-lpe (requires r)
r-lpsolve (requires r)
r-lpsolveapi (requires r)
r-lpsymphony (requires r)
r-lrbasedbi (requires r)
r-lrcell (requires r)
r-lsd (requires r)
r-lsr (requires r)
r-lumi (requires r)
r-lumihumanall.db (requires r)
r-lungcanceracvssccgeo (requires r)
r-lymphoseq (requires r)
r-lymphoseqdb (requires r)
r-m3c (requires r)
r-m6aboost (requires r)
r-macat (requires r)
r-macorrplot (requires r)
r-macpet (requires r)
r-macsquantifyr (requires r)
r-macsr (requires r)
r-made4 (requires r)
r-madseq (requires r)
r-mafdb.1kgenomes.phase3.hs37d5 (requires r)
r-mafdb.exac.r1.0.hs37d5 (requires r)
r-mafdb.exac.r1.0.nontcga.hs37d5 (requires r)
r-mafdb.gnomadex.r2.1.hs37d5 (requires r)
r-maftools (requires r)
r-mageckflute (requires r)
r-magicaxis (requires r)
r-magrittr (requires r)
r-mai (requires r)
r-mait (requires r)
r-makecdfenv (requires r)
r-maldiquant (requires r)
r-manipulatewidget (requires r)
r-mantelcorr (requires r)
r-mapkl (requires r)
r-mapplots (requires r)
r-mapredictdsc (requires r)
r-maps (requires r)
r-mapscape (requires r)
r-maptools (requires r)
r-maptree (requires r)
r-marima (requires r)
r-marr (requires r)
r-marray (requires r)
r-martini (requires r)
r-maser (requires r)
r-masigpro (requires r)
r-maskbad (requires r)
r-massarray (requires r)
r-massir (requires r)
r-massspecwavelet (requires r)
r-matchbox (requires r)
r-matching (requires r)
r-matchingr (requires r)
r-matconv (requires r)
r-mathjaxr (requires r)
r-matlab (requires r)
r-matrix.utils (requires r)
r-matrixcalc (requires r)
r-matrixcorrelation (requires r)
r-matrixeqtl (requires r)
r-matrixextra (requires r)
r-matrixgenerics (requires r)
r-matrixmodels (requires r)
r-matrixqcvis (requires r)
r-matrixrider (requires r)
r-matrixstats (requires r)
r-matter (requires r)
r-maxlik (requires r)
r-mba (requires r)
r-mbamethyl (requires r)
r-mbased (requires r)
r-mbest (requires r)
r-mbkmeans (requires r)
r-mboost (requires r)
r-mbpcr (requires r)
r-mbqn (requires r)
r-mbttest (requires r)
r-mcbiclust (requires r)
r-mcbiopi (requires r)
r-mclust (requires r)
r-mcmc (requires r)
r-mcmcglmm (requires r)
r-mcmcpack (requires r)
r-mcmcprecision (requires r)
r-mco (requires r)
r-mcsea (requires r)
r-mda (requires r)
r-mdp (requires r)
r-mdqc (requires r)
r-mdscore (requires r)
r-mdts (requires r)
r-meal (requires r)
r-measurementerror.cor (requires r)
r-measurements (requires r)
r-meat (requires r)
r-meb (requires r)
r-medips (requires r)
r-medme (requires r)
r-mefa (requires r)
r-megadepth (requires r)
r-melissa (requires r)
r-memes (requires r)
r-memuse (requires r)
r-mergeomics (requires r)
r-meshdbi (requires r)
r-meshes (requires r)
r-meshr (requires r)
r-meskit (requires r)
r-mess (requires r)
r-messina (requires r)
r-metabcombiner (requires r)
r-metaboliteidmapping (requires r)
r-metabolomicsworkbenchr (requires r)
r-metabomxtr (requires r)
r-metabosignal (requires r)
r-metacca (requires r)
r-metacycle (requires r)
r-metacyto (requires r)
r-metadynminer (requires r)
r-metadynminer-git (requires r)
r-metadynminer3d (requires r)
r-metadynminer3d-git (requires r)
r-metafor (requires r)
r-metagene2 (requires r)
r-metagenomeseq (requires r)
r-metahdep (requires r)
r-metama (requires r)
r-metamisc (requires r)
r-metams (requires r)
r-metaneighbor (requires r)
r-metap (requires r)
r-metapod (requires r)
r-metapone (requires r)
r-metaseq (requires r)
r-metbrewer (requires r)
r-metcirc (requires r)
r-methcp (requires r)
r-methimpute (requires r)
r-methinheritsim (requires r)
r-methrix (requires r)
r-methylaid (requires r)
r-methylcc (requires r)
r-methylclock (requires r)
r-methylclockdata (requires r)
r-methylgsa (requires r)
r-methylinheritance (requires r)
r-methylkit (requires r)
r-methylmix (requires r)
r-methylmnm (requires r)
r-methylpipe (requires r)
r-methylseekr (requires r)
r-methylsig (requires r)
r-methylumi (requires r)
r-metid (requires r)
r-metnet (requires r)
r-mfuzz (requires r)
r-mgfm (requires r)
r-mgfr (requires r)
r-mglm (requires r)
r-mgsa (requires r)
r-mgsub (requires r)
r-mgsz (requires r)
r-mi (requires r)
r-mia (requires r)
r-miasim (requires r)
r-miaviz (requires r)
r-microbenchmark (requires r)
r-microbiome (requires r)
r-microbiomedasim (requires r)
r-microbiomeexplorer (requires r)
r-microbiomemarker (requires r)
r-microbiomeprofiler (requires r)
r-microbiotaprocess (requires r)
r-microrna (requires r)
r-midashla (requires r)
r-migsa (requires r)
r-mimager (requires r)
r-mime (requires r)
r-mimosa (requires r)
r-mindonstats (requires r)
r-mineica (requires r)
r-minerva (requires r)
r-minfi (requires r)
r-minimumdistance (requires r)
r-miniui (requires r)
r-minpack.lm (requires r)
r-minqa (requires r)
r-mipp (requires r)
r-miqc (requires r)
r-mira (requires r)
r-mirage (requires r)
r-mirbase.db (requires r)
r-mirbaseconverter (requires r)
r-mirbaseversions.db (requires r)
r-mircompdata (requires r)
r-mirintegrator (requires r)
r-mirlab (requires r)
r-mirnameconverter (requires r)
r-mirnapath (requires r)
r-mirnatap (requires r)
r-mirnatap.db (requires r)
r-mirtarrnaseq (requires r)
r-misc3d (requires r)
r-misctools (requires r)
r-missforest (requires r)
r-missmda (requires r)
r-missmethyl (requires r)
r-missrows (requires r)
r-mistyr (requires r)
r-mitch (requires r)
r-mitoclone2 (requires r)
r-mitools (requires r)
r-mixomics (requires r)
r-mixsqp (requires r)
r-mixtools (requires r)
r-mkmisc (requires r)
r-mlbench (requires r)
r-mle.tools (requires r)
r-mlinterfaces (requires r)
r-mlmetrics (requires r)
r-mlp (requires r)
r-mlr (requires r)
r-mlr3learners (requires r)
r-mlr3misc (requires r)
r-mlseq (requires r)
r-mmappr2 (requires r)
r-mmdiff2 (requires r)
r-mmuphin (requires r)
r-mnem (requires r)
r-mnormt (requires r)
r-mnp (requires r)
r-moanin (requires r)
r-moda (requires r)
r-modeest (requires r)
r-modelmetrics (requires r)
r-modeltools (requires r)
r-modstrings (requires r)
r-modules (requires r)
r-mofa2 (requires r)
r-mofadata (requires r)
r-mogamun (requires r)
r-mogsa (requires r)
r-moma (requires r)
r-moments (requires r)
r-monalisa (requires r)
r-moonlightr (requires r)
r-mosaiccore (requires r)
r-mosaics (requires r)
r-motifbreakr (requires r)
r-motifcounter (requires r)
r-motifdb (requires r)
r-motifmatchr (requires r)
r-motifstack (requires r)
r-mousefm (requires r)
r-move (requires r)
r-mpfe (requires r)
r-mpinet (requires r)
r-mpm (requires r)
r-mpmi (requires r)
r-mppa (requires r)
r-mpra (requires r)
r-mpranalyze (requires r)
r-mqmetrics (requires r)
r-mqtl (requires r)
r-mrfdepth (requires r)
r-mrmre (requires r)
r-msa (requires r)
r-msar (requires r)
r-msbackendmassbank (requires r)
r-msbackendmgf (requires r)
r-msbackendrawfilereader (requires r)
r-mscoreutils (requires r)
r-msdata (requires r)
r-msfeatures (requires r)
r-msgbsr (requires r)
r-msgfgui (requires r)
r-msgfplus (requires r)
r-msgps (requires r)
r-msigdb (requires r)
r-msigdbr (requires r)
r-msimpute (requires r)
r-msmseda (requires r)
r-msmstests (requires r)
r-msnid (requires r)
r-msprep (requires r)
r-mspurity (requires r)
r-msqc (requires r)
r-msqrob2 (requires r)
r-msstatsconvert (requires r)
r-msstatslip (requires r)
r-msstatslobd (requires r)
r-msstatsptm (requires r)
r-msstatsqc (requires r)
r-msstatsqcgui (requires r)
r-msstatstmt (requires r)
r-msstatstmtptm (requires r)
r-muhaz (requires r)
r-mulcom (requires r)
r-multcomp (requires r)
r-multcompview (requires r)
r-multiassayexperiment (requires r)
r-multibac (requires r)
r-multibridge (requires r)
r-multiclust (requires r)
r-multicool (requires r)
r-multidataset (requires r)
r-multidplyr (requires r)
r-multigsea (requires r)
r-multihiccompare (requires r)
r-multimed (requires r)
r-multitaper (requires r)
r-mumosa (requires r)
r-mungesumstats (requires r)
r-munsell (requires r)
r-mus (requires r)
r-mus.musculus (requires r)
r-muscat (requires r)
r-muscle (requires r)
r-musicatk (requires r)
r-mustat (requires r)
r-mutationalpatterns (requires r)
r-mutoss (requires r)
r-mvcclass (requires r)
r-mvnormtest (requires r)
r-mvoutlier (requires r)
r-mvshapirotest (requires r)
r-mvtnorm (requires r)
r-mwastools (requires r)
r-myvariant (requires r)
r-mzid (requires r)
r-mzr (requires r)
r-nabor (requires r)
r-nada (requires r)
r-nadfinder (requires r)
r-naivebayes (requires r)
r-naniar (requires r)
r-nanoarrow (requires r)
r-nanomethviz (requires r)
r-nanoparquet (requires r)
r-nanostringdiff (requires r)
r-nanostringnctools (requires r)
r-nanostringqcpro (requires r)
r-nanotime (requires r)
r-nanotube (requires r)
r-naturalsort (requires r)
r-nbamseq (requires r)
r-nbclust (requires r)
r-nbpseq (requires r)
r-nbsplice (requires r)
r-ncdf4 (requires r)
r-ncdfflow (requires r)
r-ncgtw (requires r)
r-ncmisc (requires r)
r-ncrnatools (requires r)
r-ndexr (requires r)
r-nearbynding (requires r)
r-nempi (requires r)
r-neo4r (requires r)
r-netactivitydata (requires r)
r-netbiov (requires r)
r-netboxr (requires r)
r-netdx (requires r)
r-nethet (requires r)
r-netomics (requires r)
r-netpathminer (requires r)
r-netprior (requires r)
r-netrep (requires r)
r-netresponse (requires r)
r-netsam (requires r)
r-netsmooth (requires r)
r-network (requires r)
r-networkbma (requires r)
r-networkd3 (requires r)
r-networktoolbox (requires r)
r-networktools (requires r)
r-newwave (requires r)
r-nglviewer (requires r)
r-nhpoisson (requires r)
r-nipals (requires r)
r-nistunits (requires r)
r-nleqslv (requires r)
r-nloptr (requires r)
r-nlp (requires r)
r-nmf (requires r)
r-nmi (requires r)
r-nnlasso (requires r)
r-nnls (requires r)
r-nnnorm (requires r)
r-nntensor (requires r)
r-nondetects (requires r)
r-nor1mix (requires r)
r-norce (requires r)
r-norm (requires r)
r-norm2 (requires r)
r-normalize450k (requires r)
r-normalyzerde (requires r)
r-normqpcr (requires r)
r-normr (requires r)
r-nortest (requires r)
r-nozzle.r1 (requires r)
r-np (requires r)
r-nparc (requires r)
r-npgsea (requires r)
r-nsprcomp (requires r)
r-nucleosim (requires r)
r-nucler (requires r)
r-nucpos (requires r)
r-nullranges (requires r)
r-numbers (requires r)
r-numderiv (requires r)
r-nupop (requires r)
r-nxtirfcore (requires r)
r-nxtirfdata (requires r)
r-nycflights13 (requires r)
r-oaqc (requires r)
r-objectsignals (requires r)
r-occugene (requires r)
r-ocplus (requires r)
r-odbc (requires r)
r-oder (requires r)
r-odseq (requires r)
r-officer (requires r)
r-oligoclasses (requires r)
r-olin (requires r)
r-olingui (requires r)
r-omadb (requires r)
r-omicade4 (requires r)
r-omiccircos (requires r)
r-omicplotr (requires r)
r-omicrexposome (requires r)
r-omicspca (requires r)
r-omicspcadata (requires r)
r-omicsprint (requires r)
r-omixer (requires r)
r-onassis (requires r)
r-oncomix (requires r)
r-oncoscore (requires r)
r-oncosimulr (requires r)
r-onlinefdr (requires r)
r-ontologyindex (requires r)
r-ontologyplot (requires r)
r-oompabase (requires r)
r-oompadata (requires r)
r-opencyto (requires r)
r-openprimerui (requires r)
r-openssl (requires r)
r-openstats (requires r)
r-openxlsx (requires r)
r-operator.tools (requires r)
r-oppar (requires r)
r-oppti (requires r)
r-optimalflow (requires r)
r-optimalflowdata (requires r)
r-optimparallel (requires r)
r-opweight (requires r)
r-orderedlist (requires r)
r-ore (requires r)
r-orfhunter (requires r)
r-organism.dplyr (requires r)
r-orgmassspecr (requires r)
r-oriclust (requires r)
r-origami (requires r)
r-orqa (requires r)
r-orthogene (requires r)
r-osat (requires r)
r-oscope (requires r)
r-osfr (requires r)
r-otubase (requires r)
r-outliers (requires r)
r-oveseg (requires r)
r-paa (requires r)
r-packfinder (requires r)
r-padma (requires r)
r-padog (requires r)
r-pagerank (requires r)
r-paintmap (requires r)
r-pairadise (requires r)
r-paircompviz (requires r)
r-paireddata (requires r)
r-pairkat (requires r)
r-pairsd3 (requires r)
r-pak (requires r)
r-palmerpenguins (requires r)
r-palr (requires r)
r-pals (requires r)
r-pamr (requires r)
r-pan (requires r)
r-pandar (requires r)
r-pander (requires r)
r-panelcn.mops (requires r)
r-panp (requires r)
r-panr (requires r)
r-panvizgenerator (requires r)
r-paper (requires r)
r-paradox (requires r)
r-parallellogger (requires r)
r-parallelly (requires r)
r-parallelmap (requires r)
r-paramhelpers (requires r)
r-paran (requires r)
r-parglms (requires r)
r-parmigene (requires r)
r-parody (requires r)
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Sources (5)

Latest Comments

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alexanderp commented on 2019-10-15 07:52 (UTC)

@xia0er, I guess the first question is how long ago the docker container was built and whether you updated software inside the container.

xia0er commented on 2019-10-15 05:24 (UTC)

Anyone experiencing issue when installing the classInt package on r-mkl? I am getting a strange error on an otherwise fully functional r-mkl installation:

... gcc -shared -L/usr/lib64/R/lib -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -o classInt.so fish1.o init.o -lgfortran -limf -lm -lquadmath -L/usr/lib64/R/lib -lR /usr/sbin/ld: cannot find -limf collect2: error: ld returned 1 exit status make: *** [/usr/share/R//make/shlib.mk:6: classInt.so] Error 1 ERROR: compilation failed for package ‘classInt’ ...

But libimf.so is present in the /opt/intel/lib directory.

Besides, it also complains missing include dirs in a warning message, but, oddly, pointing to 2019.4.243

gfortran -fno-optimize-sibling-calls -fpic -m64 -I/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include -c fish1.f -o fish1.o f951: Warning: Nonexistent include directory ‘/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include’ [-Wmissing-include-dirs] fish1.f:100:72:

100 | DO 10 I=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fish1.f:132:72:

132 | 40 IWORK(I,1)=1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)

The classInt package installs successfully on a regular (non-mkl) R installation.

This happens when running r-mkl on an archlinux docker container, so there is no contamination from an earlier installation of mkl etc.

I appreciate it if anyone can help shed light on what may be happening here. Thanks!

The full stdout with error message can be found at https://gist.github.com/lmwang9527/48386437de1574aac45cb27725f129c7

alexanderp commented on 2019-07-26 07:45 (UTC)

Great @petronny. Thanks for your effort.

petronny commented on 2019-07-26 07:40 (UTC) (edited on 2019-07-26 07:41 (UTC) by petronny)

Hi, I provide a pre-built binary of this package at arch4edu.
Also please vote at this issue if you want more pre-built R packages.

petronny commented on 2019-07-24 07:06 (UTC) (edited on 2019-07-24 07:06 (UTC) by petronny)

Every time Intel MKL gets updated, compilation of R with icc needs to be adapted.

Actually I can deal with that, I can provide a well-built binary with every icc or r-mkl update. But I'll use gcc then since there is no gain when using icc.

alexanderp commented on 2019-07-24 06:40 (UTC) (edited on 2019-07-24 06:41 (UTC) by alexanderp)

Hi @petronny.

Every time Intel MKL gets updated, compilation of R with icc needs to be adapted.

I measured no gain when using icc, therefore this package defaults to gcc.

See some of my benchmarks here: https://github.com/alexisph/high_performance_r

petronny commented on 2019-07-23 07:24 (UTC)

And is building with gcc the recommend way by the official R group to build with MKL support?
If so I can give up building with icc and using gcc now.

petronny commented on 2019-07-23 07:21 (UTC) (edited on 2019-07-23 07:21 (UTC) by petronny)

Hi, thanks for maintaining this package.
Could you help with building with icc?
I've un-comment the line _CC="icc" but I get errors:

icc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -D_FORTIFY_SOURCE=2 -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -fPIC -m64 -march=native -fp-model precise -fp-model source -I/opt/intel/compilers_and_libraries_2019.4.243/li
nux/mkl/include  -c envir.c -o envir.o
arithmetic.c(59): warning #274: declaration is not visible outside of function
  int matherr(struct exception *exc)
                     ^

arithmetic.c(61): error: pointer to incomplete class type is not allowed
      switch (exc->type) {
              ^

arithmetic.c(62): error: identifier "DOMAIN" is undefined
      case DOMAIN:
           ^

arithmetic.c(63): error: identifier "SING" is undefined
      case SING:
           ^

arithmetic.c(66): error: identifier "OVERFLOW" is undefined
      case OVERFLOW:
           ^

arithmetic.c(69): error: identifier "UNDERFLOW" is undefined
      case UNDERFLOW:
           ^

arithmetic.c(70): error: pointer to incomplete class type is not allowed
        exc->retval = 0.0;
        ^

icc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -D_FORTIFY_SOURCE=2 -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -fPIC -m64 -march=native -fp-model precise -fp-model source -I/opt/intel/compilers_and_libraries_2019.4.243/li
nux/mkl/include  -c errors.c -o errors.o
icc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -D_FORTIFY_SOURCE=2 -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -fPIC -m64 -march=native -fp-model precise -fp-model source -I/opt/intel/compilers_and_libraries_2019.4.243/li
nux/mkl/include  -c eval.c -o eval.o
icc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -D_FORTIFY_SOURCE=2 -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -fPIC -m64 -march=native -fp-model precise -fp-model source -I/opt/intel/compilers_and_libraries_2019.4.243/li
nux/mkl/include  -c format.c -o format.o
compilation aborted for arithmetic.c (code 2)
make[3]: *** [../../Makeconf:124: arithmetic.o] Error 2
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/build/r-mkl/src/R-3.6.1/src/main'
make[2]: *** [Makefile:135: R] Error 2
make[2]: Leaving directory '/build/r-mkl/src/R-3.6.1/src/main'
make[1]: *** [Makefile:28: R] Error 1
make[1]: Leaving directory '/build/r-mkl/src/R-3.6.1/src'
make: *** [Makefile:61: R] Error 1
==> ERROR: A failure occurred in build().

blazko commented on 2019-07-15 07:40 (UTC)

Is anyone else facing validity checks problem with parallel_studio_xe?

==> Validating source files with sha256sums...
    parallel_studio_xe_2019_update4_cluster_edition.tgz ... FAILED
    intel_compilers.sh ... Passed
    intel_vtune-amplifier.sh ... Passed
    intel_advisor.sh ... Passed
    intel_inspector.sh ... Passed
    intel-composer.install ... Passed
    intel-common-libs.conf ... Passed
    intel-fortran.conf ... Passed
    intel-openmp.conf ... Passed
    intel-mkl.conf ... Passed
    intel-mpi.conf ... Passed
    intel-ipp.conf ... Passed
    intel-tbb.conf ... Passed
    intel-mkl.sh ... Passed
    intel-mkl.install ... Passed
    intel-mkl-th.conf ... Passed
    intel-tbb.install ... Passed
    EULA.txt ... Passed
==> ERROR: One or more files did not pass the validity check!

alexanderp commented on 2019-05-17 11:46 (UTC)

Thanks for the report @blazko. To be honest, those numbers look strange to me... Did you consider reporting this to the Intel MKL forums? (https://software.intel.com/en-us/forums/intel-math-kernel-library)

By the way, have you done any benchmark comparisons between the versions?